STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3035PFAM: carbohydrate kinase FGGY; KEGG: pac:PPA2321 sugar kinase, putative xylulose kinase; Belongs to the FGGY kinase family. (502 aa)    
Predicted Functional Partners:
Smed_3034
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: dge:Dgeo_2865 short-chain dehydrogenase/reductase SDR.
       0.773
Smed_3033
PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: rsp:RSP_2371 3-oxoacyl-(acyl-carrier protein) reductase / short-chain dehydrogenase/reductase SDR.
       0.752
Smed_3037
PFAM: alpha/beta hydrolase fold; biotin/lipoyl attachment domain-containing protein; E3 binding domain protein; KEGG: vei:Veis_2228 alpha/beta hydrolase fold.
 
     0.702
Smed_3040
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vfi:VF1446 ribose transport system permease protein RbsC.
  
    0.678
Smed_3041
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_02469 ABC-type sugar transport system, ATPase component.
  
    0.678
Smed_3036
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.661
Smed_3038
PFAM: Transketolase central region; Transketolase domain protein; KEGG: gsu:GSU2436 dehydrogenase complex, E1 component, beta subunit.
       0.661
Smed_3039
PFAM: dehydrogenase E1 component; KEGG: tte:TTE0186 Thiamine pyrophosphate-dependent dehydrogenases, E1 component alpha subunit.
       0.661
Smed_2701
PFAM: 3-dehydroquinate synthase; KEGG: ret:RHE_PA00022 putative glycerol 1-phosphate dehydrogenase protein (L-arabinose utilization protein) protein.
 
  
 0.564
Smed_2157
PFAM: class II aldolase/adducin family protein; KEGG: sme:SMc01621 putative L-fuculose phosphate aldolase protein.
 
  
 0.546
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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