STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3040Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vfi:VF1446 ribose transport system permease protein RbsC. (348 aa)    
Predicted Functional Partners:
Smed_3041
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: hch:HCH_02469 ABC-type sugar transport system, ATPase component.
 0.990
Smed_2474
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02337 putative ATP-binding ABC transporter protein.
 0.967
Smed_2443
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02032 putative ATP-binding ABC transporter protein.
 0.965
Smed_3125
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: atc:AGR_C_3484 ribose ABC transporter (ATP-binding protein).
 0.965
Smed_3228
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02773 putative ABC transporter ATP-binding protein.
 0.965
Smed_3042
ABC-type sugar transport system periplasmic component-like protein; KEGG: jan:Jann_2406 periplasmic binding protein/LacI transcriptional regulator.
 
   0.934
Smed_2475
Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02338 putative periplasmic binding ABC transporter protein.
   0.849
Smed_0343
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: rxy:Rxyl_2603 twin-arginine translocation pathway signal.
   0.847
Smed_3126
Monosaccharide-transporting ATPase; PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: atc:AGR_C_3486 bifunctional carbohydrate binding and transport protein.
   0.845
Smed_3227
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02774 putative ABC transporter periplasmic binding protein.
   0.843
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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