STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ThiPTIGRFAM: thiamine ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03870 putative transport system permease ABC transporter protein. (531 aa)    
Predicted Functional Partners:
TbpA
TIGRFAM: ABC transporter, periplasmic binding protein, thiB subfamily; thiamine ABC transporter, periplasmic binding protein; PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc03869 putative periplasmic binding ABC transporter protein.
 
 
 0.990
thiQ
ABC transporter, ATPase subunit, ThiQ subfamily; Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Thiamine importer (TC 3.A.1.19.1) family.
 
 
 0.989
Smed_1948
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc04317 iron-binding periplasmic protein.
 
  
 0.633
Smed_2134
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc01605 putative periplasmic binding ABC transporter protein.
 
  
 0.598
Smed_3281
PFAM: extracellular solute-binding protein family 1; KEGG: rde:RD1_1059 iron ABC transporter iron-binding protein, putative.
 
  
 0.592
Smed_0327
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc00784 putative iron binding protein.
  
  
 0.535
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.