STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3138PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc03894 putative amino-acid ABC transporter ATP-binding protein. (253 aa)    
Predicted Functional Partners:
Smed_3137
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03893 putative amino-acid transport system permease ABC transporter protein.
 0.996
Smed_3136
PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc03891 putative amino acid-binding periplasmic ABC transporter protein; Belongs to the bacterial solute-binding protein 3 family.
 
 0.977
Smed_2980
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mll5422 ABC transporter permease protein.
 
 0.890
Smed_2848
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03133 putative amino-acid transport system permease ABC transporter protein.
 
 0.881
Smed_3103
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03865 putative amino-acid transport system permease ABC transporter protein.
 
 0.864
Smed_2100
TIGRFAM: polar amino acid ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ana:alr4166 polar amino acid transport system permease protein.
 
 
 0.841
Smed_2979
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: mlo:mll5423 unknown protein.
 
 
 0.786
Smed_0175
PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc02259 putative periplasmic binding ABC transporter protein.
 
 
 0.750
Smed_1588
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: sme:SMc00140 putative amino-acid binding periplasmic protein.
 
 
 0.744
Smed_2850
PFAM: extracellular solute-binding protein family 3; KEGG: sme:SMc03131 putative amino acid-binding periplasmic ABC transporter protein.
 
 
 0.744
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.