STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3157PFAM: protein of unknown function DUF1338; KEGG: sme:SMc04383 hypothetical protein. (472 aa)    
Predicted Functional Partners:
Smed_3158
PFAM: FAD linked oxidase domain protein; KEGG: sme:SMc04384 putative oxidoreductase protein.
 
    0.801
Smed_3159
PFAM: aldehyde dehydrogenase; KEGG: sme:SMc04385 putative aldehyde dehydrogenase transmembrane protein; Belongs to the aldehyde dehydrogenase family.
 
    0.749
Smed_3160
PFAM: aminotransferase class I and II; KEGG: sme:SMc04386 aspartate aminotransferase B protein.
       0.629
Smed_3156
Transcriptional regulator, LysR family; PFAM: regulatory protein LysR; LysR substrate-binding; KEGG: sme:SMc04882 probable transcription regulator protein; Belongs to the LysR transcriptional regulatory family.
 
     0.611
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.