STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3228PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02773 putative ABC transporter ATP-binding protein. (517 aa)    
Predicted Functional Partners:
Smed_3229
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02772 putative sugar ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.988
Smed_0914
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02019 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 0.966
Smed_2442
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02031 putative permease protein; Belongs to the binding-protein-dependent transport system permease family.
 0.966
Smed_2473
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc02452 putative transport system permease ABC transporter protein.
 0.966
Smed_3040
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: vfi:VF1446 ribose transport system permease protein RbsC.
 0.965
Smed_3127
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: atc:AGR_C_3488 bifunctional carbohydrate binding and transport protein; Belongs to the binding-protein-dependent transport system permease family.
 0.965
Smed_0344
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: msm:MSMEG_1373 ribose/xylose/arabinose/galactoside ABC-type transport systems, permease components.
 0.964
Smed_3227
PFAM: periplasmic binding protein/LacI transcriptional regulator; KEGG: sme:SMc02774 putative ABC transporter periplasmic binding protein.
 
   0.890
Smed_2042
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: mlo:mll7365 ABC transporter permease protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.818
Smed_0227
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: sme:SMc03000 putative permease ABC transporter protein; Belongs to the binding-protein-dependent transport system permease family.
 
 0.805
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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