STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3243TIGRFAM: Double-strand break repair protein AddB; KEGG: sme:SMc02759 hypothetical protein. (1059 aa)    
Predicted Functional Partners:
Smed_3242
TIGRFAM: Double-strand break repair helicase AddA; PFAM: UvrD/REP helicase; KEGG: sme:SMc02760 putative ATP-dependent nuclease/helicase protein; Belongs to the helicase family. UvrD subfamily.
 
   
 0.963
Smed_3246
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: sme:SMc02756 putative sensor histidine kinase protein.
 
     0.920
Smed_3245
PFAM: aminoglycoside phosphotransferase; protein of unknown function UPF0079; KEGG: sme:SMc02757 hypothetical protein.
 
     0.847
Smed_3244
PFAM: Nucleotidyl transferase; KEGG: sme:SMc02758 putative nucleotidyl transferase protein.
       0.816
Smed_3053
Outer membrane lipoprotein carrier protein LolA; Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane).
 
     0.809
HolA
TIGRFAM: DNA polymerase III, delta subunit; PFAM: DNA polymerase III delta; KEGG: sme:SMc02802 putative DNA polymerase III, delta subunit.
 
   
 0.782
Smed_3251
Integral membrane sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; KEGG: sme:SMc04446 histidine kinase sensory transmembrane protein.
 
     0.757
Smed_3216
PFAM: import inner membrane translocase subunit Tim44; KEGG: sme:SMc02786 putative translocase transmembrane protein.
  
     0.740
Smed_3195
PFAM: protein of unknown function DUF1013; KEGG: sme:SMc04094 hypothetical protein.
  
     0.727
Smed_2969
PFAM: HemY domain protein; KEGG: sme:SMc03234 hypothetical protein.
  
     0.721
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.