STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3281PFAM: extracellular solute-binding protein family 1; KEGG: rde:RD1_1059 iron ABC transporter iron-binding protein, putative. (343 aa)    
Predicted Functional Partners:
Smed_1947
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04316 probable ferric iron transport system permease protein.
 
 
 0.961
Smed_1948
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc04317 iron-binding periplasmic protein.
 
  
 
0.930
Smed_0317
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00775 putative iron(III) permease protein.
 
 
 0.921
Smed_0327
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc00784 putative iron binding protein.
  
  
 0.920
Smed_3284
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: bmb:BruAb2_0512 ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 0.909
Smed_1163
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc02068 putative ABC transporter ATP-binding protein; Belongs to the ABC transporter superfamily.
  
 
 0.840
Smed_1946
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sme:SMc04300 probable ferric iron transport ATP-binding protein.
  
 
  0.813
ThiP
TIGRFAM: thiamine ABC transporter, inner membrane subunit; PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03870 putative transport system permease ABC transporter protein.
 
  
 0.592
Smed_3279
Multi-sensor hybrid histidine kinase; PFAM: response regulator receiver; ATP-binding region ATPase domain protein; histidine kinase HAMP region domain protein; histidine kinase A domain protein; PAS fold-4 domain protein; KEGG: sit:TM1040_3231 periplasmic sensor hybrid histidine kinase.
       0.448
Smed_3280
Two component transcriptional regulator, winged helix family; PFAM: response regulator receiver; transcriptional regulator domain protein; KEGG: sit:TM1040_3232 two component transcriptional regulator, winged helix family.
       0.448
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.