STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3303TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: dge:Dgeo_1341 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like protein; Belongs to the ABC transporter superfamily. (342 aa)    
Predicted Functional Partners:
Smed_3302
TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: ttj:TTHA0473 peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
 
0.990
Smed_3305
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ecs:ECs2089 putative transport protein.
  
 0.981
Smed_3304
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rpa:RPA1472 putative dipeptide transport permease protein.
 
 
 0.967
Smed_2439
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02028 putative dipeptide transport system permease ABC transporter protein.
  
 0.935
Smed_1753
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc04295 putative peptide transport system permease ABC transporter protein.
  
 0.931
Smed_2324
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc01527 putative dipeptide transport system permease ABC transporter protein.
  
 0.907
Smed_2853
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03128 putative transport system permease ABC transporter protein.
  
 0.904
Smed_0331
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc00788 probable dipeptide transport system permease protein.
  
 0.881
Smed_2440
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02029 putative dipeptide transport system permease ABC transporter protein.
 
 
 0.865
Smed_2854
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc03127 putative transport system permease ABC transporter protein.
 
 
 0.865
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.