STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3314KEGG: sme:SMc04150 hypothetical protein. (346 aa)    
Predicted Functional Partners:
Smed_3315
PFAM: flavin-containing monooxygenase FMO; KEGG: sme:SMc04149 putative oxidoreductase protein.
 
     0.915
Smed_3312
KEGG: sme:SMc04152 hypothetical protein.
 
   
 0.901
Smed_3313
PFAM: ferredoxin; oxidoreductase FAD/NAD(P)-binding domain protein; Oxidoreductase FAD-binding domain protein; KEGG: sme:SMc04151 putative ferredoxin protein.
 
   
 0.887
Smed_3311
PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: rle:pRL110552 putative aminomethyltransferase/glycine cleavage protein; Belongs to the GcvT family.
 
   
 0.886
Smed_3316
PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: sme:SMc04148 putative aminomethyltransferase protein; Belongs to the GcvT family.
 
   
 0.822
Smed_3291
PFAM: glutamine amidotransferase class-II; KEGG: sme:SMc02610 putative amidotransferase protein.
  
     0.735
Smed_3293
Ferredoxin-dependent glutamate synthase; PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; ferredoxin-dependent glutamate synthase; KEGG: sme:SMc02612 putative oxidoreductase protein; Belongs to the glutamate synthase family.
  
     0.714
Smed_3292
PFAM: glutamate synthase alpha subunit domain protein; KEGG: sme:SMc02611 putative oxidoreductase protein.
  
     0.704
Smed_3301
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; Cupin 2 conserved barrel domain protein; KEGG: sme:SMc02620 hypothetical protein.
 
     0.605
Smed_3317
PFAM: amino acid permease-associated region; KEGG: sme:SMc04147 putative permease protein.
 
     0.590
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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