STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3333KEGG: sme:SMc04131 hypothetical protein. (473 aa)    
Predicted Functional Partners:
Smed_3334
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: sme:SMc04130 hypothetical protein.
 
     0.916
Smed_3331
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: sme:SMc04133 putative oxidoreductase protein.
 
     0.915
Smed_3332
PFAM: protein of unknown function DUF993; KEGG: sme:SMc04132 hypothetical protein.
 
   
 0.881
Smed_1270
KEGG: rle:RL3837 hypothetical protein.
  
    0.604
Smed_3330
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: sme:SMc04134 putative transcription regulator protein.
 
     0.602
Smed_1315
KEGG: mlo:mlr8544 hypothetical protein.
 
     0.570
Smed_1925
TIGRFAM: phage recombination protein Bet; PFAM: RecT protein; KEGG: mlo:mll7977 hypothetical protein.
  
     0.556
Smed_1924
PFAM: siphovirus Gp157 family protein; KEGG: mlo:mll7978 hypothetical protein.
  
     0.546
Smed_0215
HPr kinase; KEGG: sme:SMc02314 hypothetical protein.
  
     0.525
Smed_0216
KEGG: sme:SMc02315 hypothetical unknown protein.
  
     0.497
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.