STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3351PFAM: SAF domain protein; KEGG: sme:SMc04112 putative pilus assembly signal peptide protein. (269 aa)    
Predicted Functional Partners:
Smed_3352
PFAM: type II and III secretion system protein; transport-associated; KEGG: sme:SMc04111 putative pilus assembly transmembrane protein; Belongs to the bacterial secretin family.
 
  
 0.988
Smed_3354
KEGG: sme:SMc04109 putative response regulator protein.
 
  
 0.988
Smed_3356
PFAM: type II secretion system protein; KEGG: sme:SMc02821 hypothetical protein.
 
  
 0.975
Smed_3357
PFAM: type II secretion system protein; KEGG: sme:SMc02822 hypothetical protein.
 
  
 0.972
Smed_3350
PFAM: peptidase A24A prepilin type IV; KEGG: sme:SMc04113 prepilin peptidase CpaA.
 
  
 0.967
Smed_3349
PFAM: Flp/Fap pilin component; KEGG: sme:SMc04114 putative pilin subunit protein.
 
  
 0.956
Smed_3355
PFAM: type II secretion system protein E; KEGG: sme:SMc02820 putative pilus assembly protein.
 
  
 0.956
Smed_3347
PFAM: TadE family protein; KEGG: sme:SMc04117 hypothetical protein.
 
  
 0.944
Smed_3353
TIGRFAM: pilus (Caulobacter type) biogenesis lipoprotein CpaD; KEGG: sme:SMc04110 pilus assembly protein cpaD.
 
     0.942
Smed_3348
KEGG: sme:SMc04115 hypothetical protein.
 
  
 0.918
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.