STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Smed_3401PFAM: oxidoreductase domain protein; KEGG: sme:SMc02870 putative oxidoreductase protein. (354 aa)    
Predicted Functional Partners:
Smed_3403
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02872 putative permease ABC transporter protein.
 
     0.940
Smed_3402
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sme:SMc02871 putative permease ABC transporter protein.
 
     0.939
Smed_3405
PFAM: extracellular solute-binding protein family 1; KEGG: sme:SMc02873 putative periplasmic binding (signal peptide) ABC transporter protein.
 
     0.914
Smed_3408
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; UbiC transcription regulator-associated domain protein; KEGG: sme:SMc02876 putative transcription regulator protein.
 
    0.772
Smed_3400
PFAM: ABC transporter related; TOBE domain protein; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: sme:SMc02869 putative ATP-binding ABC transporter protein.
       0.741
Smed_3404
Hypothetical protein.
       0.716
MurQ
PFAM: sugar isomerase (SIS); KEGG: sme:SMc02874 hypothetical protein.
 
     0.677
Smed_3407
PFAM: ATPase BadF/BadG/BcrA/BcrD type; KEGG: sme:SMc02875 hypothetical protein.
 
    0.633
Smed_3409
Glutamine--fructose-6-phosphate transaminase (isomerizing); PFAM: sugar isomerase (SIS); KEGG: sme:SMc02877 putative glucosamine-6-phosphate isomerase.
 
     0.593
Smed_3410
TIGRFAM: N-acetylglucosamine-6-phosphate deacetylase; PFAM: amidohydrolase; KEGG: sme:SMc02878 probable N-acetylglucosamine-6-phosphate deacetylase protein.
 
    0.564
Your Current Organism:
Sinorhizobium medicae
NCBI taxonomy Id: 366394
Other names: Ensifer medicae WSM419, S. medicae WSM419, Sinorhizobium medicae WSM419
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