A0A1V6U716 protein (Penicillium coprophilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6U716

Uncharacterized protein. (257 aa)

Predicted Functional Partners:

A0A1V6U6P2

0.881

A0A1V6UNN4

0.793

A0A1V6UM58

0.729

A0A1V6U7U9

0.688

A0A1V6UG18

0.648

A0A1V6UCR5

0.638

A0A1V6UNB4

0.600

A0A1V6UFX3

0.594

A0A1V6UVB8

0.594

A0A1V6ULZ3

0.591

Your Current Organism:

Penicillium coprophilum

NCBI taxonomy Id: 36646
Other names: P. coprophilum, Penicillium coprophilum var. coprophilum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6U6P2	A0A1V6U716	DYNc domain-containing protein.	Uncharacterized protein.	0.881
A0A1V6U6P2	A0A1V6U7U9	DYNc domain-containing protein.	ANK_REP_REGION domain-containing protein.	0.688
A0A1V6U6P2	A0A1V6UCR5	DYNc domain-containing protein.	Uncharacterized protein.	0.638
A0A1V6U6P2	A0A1V6UFX3	DYNc domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.594
A0A1V6U6P2	A0A1V6UG18	DYNc domain-containing protein.	Uncharacterized protein.	0.648
A0A1V6U6P2	A0A1V6ULZ3	DYNc domain-containing protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.591
A0A1V6U6P2	A0A1V6UM58	DYNc domain-containing protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.729
A0A1V6U6P2	A0A1V6UNB4	DYNc domain-containing protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.600
A0A1V6U6P2	A0A1V6UNN4	DYNc domain-containing protein.	UBA domain-containing protein.	0.793
A0A1V6U6P2	A0A1V6UVB8	DYNc domain-containing protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.594
A0A1V6U716	A0A1V6U6P2	Uncharacterized protein.	DYNc domain-containing protein.	0.881
A0A1V6U716	A0A1V6U7U9	Uncharacterized protein.	ANK_REP_REGION domain-containing protein.	0.688
A0A1V6U716	A0A1V6UCR5	Uncharacterized protein.	Uncharacterized protein.	0.638
A0A1V6U716	A0A1V6UFX3	Uncharacterized protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.594
A0A1V6U716	A0A1V6UG18	Uncharacterized protein.	Uncharacterized protein.	0.648
A0A1V6U716	A0A1V6ULZ3	Uncharacterized protein.	AP-2 complex subunit alpha; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.591
A0A1V6U716	A0A1V6UM58	Uncharacterized protein.	Clathrin heavy chain; Clathrin is the major protein of the polyhedral coat of coated pits and vesicles; Belongs to the clathrin heavy chain family.	0.729
A0A1V6U716	A0A1V6UNB4	Uncharacterized protein.	MHD domain-containing protein; Belongs to the adaptor complexes medium subunit family.	0.600
A0A1V6U716	A0A1V6UNN4	Uncharacterized protein.	UBA domain-containing protein.	0.793
A0A1V6U716	A0A1V6UVB8	Uncharacterized protein.	AP complex subunit beta; Adaptins are components of the adaptor complexes which link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration.	0.594