A0A1V6UCE6 protein (Penicillium coprophilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6UCE6

U-box domain-containing protein. (1057 aa)

Predicted Functional Partners:

A0A1V6V5F4

0.994

A0A1V6UDK1

0.966

A0A1V6UL89

0.959

A0A1V6UU99

0.954

A0A1V6UFL9

0.952

A0A1V6UA43

0.938

A0A1V6UYG3

0.920

A0A1V6V9J6

0.920

A0A1V6UHA0

0.911

A0A1V6UJ86

0.911

Your Current Organism:

Penicillium coprophilum

NCBI taxonomy Id: 36646
Other names: P. coprophilum, Penicillium coprophilum var. coprophilum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6UA43	A0A1V6UCE6	Uncharacterized protein.	U-box domain-containing protein.	0.938
A0A1V6UA43	A0A1V6UDK1	Uncharacterized protein.	Uncharacterized protein.	0.518
A0A1V6UA43	A0A1V6UFL9	Uncharacterized protein.	Uncharacterized protein.	0.960
A0A1V6UA43	A0A1V6UL89	Uncharacterized protein.	Uncharacterized protein.	0.996
A0A1V6UA43	A0A1V6UU99	Uncharacterized protein.	MPN domain-containing protein.	0.887
A0A1V6UA43	A0A1V6UYG3	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A1V6UA43	A0A1V6V9J6	Uncharacterized protein.	Uncharacterized protein.	0.459
A0A1V6UCE6	A0A1V6UA43	U-box domain-containing protein.	Uncharacterized protein.	0.938
A0A1V6UCE6	A0A1V6UDK1	U-box domain-containing protein.	Uncharacterized protein.	0.966
A0A1V6UCE6	A0A1V6UFL9	U-box domain-containing protein.	Uncharacterized protein.	0.952
A0A1V6UCE6	A0A1V6UHA0	U-box domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.911
A0A1V6UCE6	A0A1V6UJ86	U-box domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.911
A0A1V6UCE6	A0A1V6UL89	U-box domain-containing protein.	Uncharacterized protein.	0.959
A0A1V6UCE6	A0A1V6UU99	U-box domain-containing protein.	MPN domain-containing protein.	0.954
A0A1V6UCE6	A0A1V6UYG3	U-box domain-containing protein.	Uncharacterized protein.	0.920
A0A1V6UCE6	A0A1V6V5F4	U-box domain-containing protein.	HECT domain-containing protein.	0.994
A0A1V6UCE6	A0A1V6V9J6	U-box domain-containing protein.	Uncharacterized protein.	0.920
A0A1V6UDK1	A0A1V6UA43	Uncharacterized protein.	Uncharacterized protein.	0.518
A0A1V6UDK1	A0A1V6UCE6	Uncharacterized protein.	U-box domain-containing protein.	0.966
A0A1V6UDK1	A0A1V6UFL9	Uncharacterized protein.	Uncharacterized protein.	0.619