A0A1V6UH80 protein (Penicillium coprophilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6UH80

Fungal_trans domain-containing protein. (648 aa)

Predicted Functional Partners:

A0A1V6V269

0.970

A0A1V6U7S8

0.961

A0A1V6V7A2

0.961

A0A1V6V115

0.959

A0A1V6ULL7

0.947

A0A1V6UMD0

0.947

A0A1V6UFS5

0.933

A0A1V6UEF4

0.908

A0A1V6V8F1

0.908

A0A1V6UDN1

0.868

Your Current Organism:

Penicillium coprophilum

NCBI taxonomy Id: 36646
Other names: P. coprophilum, Penicillium coprophilum var. coprophilum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6U7S8	A0A1V6UDN1	DNA_MISMATCH_REPAIR_2 domain-containing protein.	MutL_C domain-containing protein.	0.868
A0A1V6U7S8	A0A1V6UEF4	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_mis_repair domain-containing protein.	0.953
A0A1V6U7S8	A0A1V6UFS5	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.966
A0A1V6U7S8	A0A1V6UH80	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Fungal_trans domain-containing protein.	0.961
A0A1V6U7S8	A0A1V6ULL7	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Vezatin domain-containing protein.	0.871
A0A1V6U7S8	A0A1V6UMD0	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.871
A0A1V6U7S8	A0A1V6V115	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.969
A0A1V6U7S8	A0A1V6V269	DNA_MISMATCH_REPAIR_2 domain-containing protein.	DNA_mis_repair domain-containing protein.	0.986
A0A1V6U7S8	A0A1V6V8F1	DNA_MISMATCH_REPAIR_2 domain-containing protein.	Uncharacterized protein.	0.906
A0A1V6UDN1	A0A1V6U7S8	MutL_C domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.868
A0A1V6UDN1	A0A1V6UEF4	MutL_C domain-containing protein.	DNA_mis_repair domain-containing protein.	0.720
A0A1V6UDN1	A0A1V6UFS5	MutL_C domain-containing protein.	Uncharacterized protein.	0.838
A0A1V6UDN1	A0A1V6UH80	MutL_C domain-containing protein.	Fungal_trans domain-containing protein.	0.868
A0A1V6UDN1	A0A1V6ULL7	MutL_C domain-containing protein.	Vezatin domain-containing protein.	0.785
A0A1V6UDN1	A0A1V6UMD0	MutL_C domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.785
A0A1V6UDN1	A0A1V6V115	MutL_C domain-containing protein.	DNA mismatch repair protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.890
A0A1V6UDN1	A0A1V6V269	MutL_C domain-containing protein.	DNA_mis_repair domain-containing protein.	0.991
A0A1V6UDN1	A0A1V6V7A2	MutL_C domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein; Component of the post-replicative DNA mismatch repair system (MMR).	0.927
A0A1V6UDN1	A0A1V6V8F1	MutL_C domain-containing protein.	Uncharacterized protein.	0.492
A0A1V6UEF4	A0A1V6U7S8	DNA_mis_repair domain-containing protein.	DNA_MISMATCH_REPAIR_2 domain-containing protein.	0.953