A0A1V6UKV2 protein (Penicillium coprophilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6UKV2

Uncharacterized protein. (782 aa)

Predicted Functional Partners:

A0A1V6V6U4

0.670

A0A1V6UIS1

0.541

A0A1V6USC8

0.502

A0A1V6UC11

0.481

A0A1V6UH91

0.481

A0A1V6UJ29

0.481

A0A1V6URH3

0.481

A0A1V6V8D0

0.481

A0A1V6U9W8

0.440

A0A1V6UE82

0.440

Your Current Organism:

Penicillium coprophilum

NCBI taxonomy Id: 36646
Other names: P. coprophilum, Penicillium coprophilum var. coprophilum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6U9W8	A0A1V6UE82	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.999
A0A1V6U9W8	A0A1V6UKV2	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.440
A0A1V6UC11	A0A1V6UKV2	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.481
A0A1V6UC11	A0A1V6V6U4	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.551
A0A1V6UE82	A0A1V6U9W8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
A0A1V6UE82	A0A1V6UKV2	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A1V6UH91	A0A1V6UKV2	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.481
A0A1V6UH91	A0A1V6V6U4	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.585
A0A1V6UIS1	A0A1V6UKV2	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Uncharacterized protein.	0.541
A0A1V6UIS1	A0A1V6USC8	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.947
A0A1V6UJ29	A0A1V6UKV2	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.481
A0A1V6UJ29	A0A1V6V6U4	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	Uncharacterized protein.	0.585
A0A1V6UKV2	A0A1V6U9W8	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.440
A0A1V6UKV2	A0A1V6UC11	Uncharacterized protein.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.481
A0A1V6UKV2	A0A1V6UE82	Uncharacterized protein.	Uncharacterized protein.	0.440
A0A1V6UKV2	A0A1V6UH91	Uncharacterized protein.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.481
A0A1V6UKV2	A0A1V6UIS1	Uncharacterized protein.	Acyl-CoA desaturase; Stearyl-CoA desaturase that utilizes O(2) and electrons from reduced cytochrome b5 to introduce the first double bond into saturated fatty acyl-CoA substrates.	0.541
A0A1V6UKV2	A0A1V6UJ29	Uncharacterized protein.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.481
A0A1V6UKV2	A0A1V6URH3	Uncharacterized protein.	Peptidase A1 domain-containing protein; Belongs to the peptidase A1 family.	0.481
A0A1V6UKV2	A0A1V6USC8	Uncharacterized protein.	Nitrate reductase; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria.	0.502