A0A1V6UVA1 protein (Penicillium coprophilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6UVA1

Uncharacterized protein; Belongs to the DEAD box helicase family. (559 aa)

Predicted Functional Partners:

A0A1V6UIY9

0.946

NOP7

0.937

A0A1V6UHM3

0.923

ERB1

0.898

A0A1V6UIV0

0.891

A0A1V6V8L0

0.887

A0A1V6V2T6

0.886

A0A1V6UIH2

0.868

A0A1V6U796

0.867

A0A1V6UCH1

0.864

Your Current Organism:

Penicillium coprophilum

NCBI taxonomy Id: 36646
Other names: P. coprophilum, Penicillium coprophilum var. coprophilum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
A0A1V6U796	A0A1V6UCH1	A0A1V6U796	A0A1V6UCH1	RNase III domain-containing protein.	Uncharacterized protein.	0.400
A0A1V6U796	A0A1V6UHM3	A0A1V6U796	A0A1V6UHM3	RNase III domain-containing protein.	CP-type G domain-containing protein.	0.532
A0A1V6U796	A0A1V6UIH2	A0A1V6U796	A0A1V6UIH2	RNase III domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.411
A0A1V6U796	A0A1V6UVA1	A0A1V6U796	A0A1V6UVA1	RNase III domain-containing protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.867
A0A1V6U796	A0A1V6V8L0	A0A1V6U796	A0A1V6V8L0	RNase III domain-containing protein.	Uncharacterized protein.	0.556
A0A1V6UCH1	A0A1V6U796	A0A1V6UCH1	A0A1V6U796	Uncharacterized protein.	RNase III domain-containing protein.	0.400
A0A1V6UCH1	A0A1V6UHM3	A0A1V6UCH1	A0A1V6UHM3	Uncharacterized protein.	CP-type G domain-containing protein.	0.866
A0A1V6UCH1	A0A1V6UIH2	A0A1V6UCH1	A0A1V6UIH2	Uncharacterized protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.951
A0A1V6UCH1	A0A1V6UIV0	A0A1V6UCH1	A0A1V6UIV0	Uncharacterized protein.	Nop domain-containing protein.	0.953
A0A1V6UCH1	A0A1V6UIY9	A0A1V6UCH1	A0A1V6UIY9	Uncharacterized protein.	Uncharacterized protein.	0.471
A0A1V6UCH1	A0A1V6UVA1	A0A1V6UCH1	A0A1V6UVA1	Uncharacterized protein.	Uncharacterized protein; Belongs to the DEAD box helicase family.	0.864
A0A1V6UCH1	A0A1V6V2T6	A0A1V6UCH1	A0A1V6V2T6	Uncharacterized protein.	Uncharacterized protein.	0.681
A0A1V6UCH1	A0A1V6V8L0	A0A1V6UCH1	A0A1V6V8L0	Uncharacterized protein.	Uncharacterized protein.	0.917
A0A1V6UCH1	ERB1	A0A1V6UCH1	A0A1V6UHS6	Uncharacterized protein.	Ribosome biogenesis protein ERB1; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.853
A0A1V6UCH1	NOP7	A0A1V6UCH1	A0A1V6UL00	Uncharacterized protein.	Pescadillo homolog; Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.	0.886
A0A1V6UHM3	A0A1V6U796	A0A1V6UHM3	A0A1V6U796	CP-type G domain-containing protein.	RNase III domain-containing protein.	0.532
A0A1V6UHM3	A0A1V6UCH1	A0A1V6UHM3	A0A1V6UCH1	CP-type G domain-containing protein.	Uncharacterized protein.	0.866
A0A1V6UHM3	A0A1V6UIH2	A0A1V6UHM3	A0A1V6UIH2	CP-type G domain-containing protein.	Nucleolar GTP-binding protein 1; Involved in the biogenesis of the 60S ribosomal subunit. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. OBG GTPase family. NOG subfamily.	0.997
A0A1V6UHM3	A0A1V6UIV0	A0A1V6UHM3	A0A1V6UIV0	CP-type G domain-containing protein.	Nop domain-containing protein.	0.943
A0A1V6UHM3	A0A1V6UIY9	A0A1V6UHM3	A0A1V6UIY9	CP-type G domain-containing protein.	Uncharacterized protein.	0.924