A0A1V6V1I9 protein (Penicillium coprophilum)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

A0A1V6V1I9

Uncharacterized protein. (910 aa)

Predicted Functional Partners:

A0A1V6UFD0

0.999

A0A1V6UFF8

0.999

A0A1V6UIS9

0.999

A0A1V6URL1

0.999

A0A1V6UYJ1

0.999

A0A1V6V7T2

0.999

A0A1V6V8W8

0.999

A0A1V6U9L9

0.998

A0A1V6UA51

0.998

A0A1V6UIV0

0.998

Your Current Organism:

Penicillium coprophilum

NCBI taxonomy Id: 36646
Other names: P. coprophilum, Penicillium coprophilum var. coprophilum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
A0A1V6U9L9	A0A1V6UA51	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A1V6U9L9	A0A1V6UFD0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.980
A0A1V6U9L9	A0A1V6UFF8	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.999
A0A1V6U9L9	A0A1V6UIS9	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.997
A0A1V6U9L9	A0A1V6UIV0	WD_REPEATS_REGION domain-containing protein.	Nop domain-containing protein.	0.999
A0A1V6U9L9	A0A1V6URL1	WD_REPEATS_REGION domain-containing protein.	Sas10 domain-containing protein.	0.991
A0A1V6U9L9	A0A1V6UYJ1	WD_REPEATS_REGION domain-containing protein.	DRIM domain-containing protein.	0.998
A0A1V6U9L9	A0A1V6V1I9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A1V6U9L9	A0A1V6V7T2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.983
A0A1V6U9L9	A0A1V6V8W8	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A1V6UA51	A0A1V6U9L9	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.999
A0A1V6UA51	A0A1V6UFD0	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.993
A0A1V6UA51	A0A1V6UFF8	WD_REPEATS_REGION domain-containing protein.	U3 small nucleolar RNA-associated protein 22.	0.999
A0A1V6UA51	A0A1V6UIS9	WD_REPEATS_REGION domain-containing protein.	KRR1 small subunit processome component; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly.	0.993
A0A1V6UA51	A0A1V6UIV0	WD_REPEATS_REGION domain-containing protein.	Nop domain-containing protein.	0.996
A0A1V6UA51	A0A1V6URL1	WD_REPEATS_REGION domain-containing protein.	Sas10 domain-containing protein.	0.995
A0A1V6UA51	A0A1V6UYJ1	WD_REPEATS_REGION domain-containing protein.	DRIM domain-containing protein.	0.998
A0A1V6UA51	A0A1V6V1I9	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.998
A0A1V6UA51	A0A1V6V7T2	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.988
A0A1V6UA51	A0A1V6V8W8	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998