STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CFH80_05980Unannotated protein. (186 aa)    
Predicted Functional Partners:
GCA_001548055_00969
Unannotated protein.
    
  0.704
nifJ
Unannotated protein.
    
  0.691
CFH80_06145
Unannotated protein.
  
 
  0.664
CFH80_05975
Unannotated protein.
 
     0.663
metG
Unannotated protein; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
    
  0.596
GCA_001548055_00227
Unannotated protein.
  
  
 0.549
CFH80_03785
Unannotated protein; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
  0.502
hisI
Unannotated protein; In the N-terminal section; belongs to the PRA-CH family.
    
  0.501
GCA_001548055_02054
Unannotated protein.
  
     0.484
GCA_001548055_00931
Unannotated protein.
  
     0.433
Your Current Organism:
Sulfurospirillum cavolei
NCBI taxonomy Id: 366522
Other names: DSM 18149, JCM 13918, S. cavolei, Sulfurospirillum cavolei Kodama et al. 2007, Sulfurospirillum sp. Phe 91, strain Phe91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.