STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CFH80_05540Unannotated protein. (594 aa)    
Predicted Functional Partners:
GCA_001548055_02505
Unannotated protein.
 
 0.999
alaS
Unannotated protein; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.998
GCA_001548055_01115
Unannotated protein.
 
 0.995
GCA_001548055_01059
Unannotated protein.
 
 0.989
GCA_001548055_00931
Unannotated protein.
   
 0.988
GCA_001548055_00356
Unannotated protein.
  
 0.987
rpoA
Unannotated protein; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.987
CFH80_09185
Unannotated protein.
   
 0.984
CFH80_09805
Unannotated protein.
   
 0.984
GCA_001548055_02366
Unannotated protein.
   
 0.984
Your Current Organism:
Sulfurospirillum cavolei
NCBI taxonomy Id: 366522
Other names: DSM 18149, JCM 13918, S. cavolei, Sulfurospirillum cavolei Kodama et al. 2007, Sulfurospirillum sp. Phe 91, strain Phe91
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.