STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tsfUnannotated protein. (355 aa)    
Predicted Functional Partners:
GCA_001548055_02376
Unannotated protein.
   
 0.999
CFH80_07360
Unannotated protein.
  
 
 0.990
GCA_001548055_02286
Unannotated protein.
  
 0.984
GCA_001548055_02367
Unannotated protein.
 
  
 0.957
GCA_001548055_02366
Unannotated protein.
  
  
 0.952
rplS
Unannotated protein; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
 
 0.949
frr
Unannotated protein; Responsible for the release of ribosomes from messenger RNA at the termination of protein biosynthesis. May increase the efficiency of translation by recycling ribosomes from one round of translation to another; Belongs to the RRF family.
 
 
 0.946
GCA_001548055_00497
Unannotated protein.
 
 
 0.945
GCA_001548055_02363
Unannotated protein.
 
 
 0.942
rplU
Unannotated protein; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.
 
 
 0.940
Your Current Organism:
Sulfurospirillum cavolei
NCBI taxonomy Id: 366522
Other names: DSM 18149, JCM 13918, S. cavolei, Sulfurospirillum cavolei Kodama et al. 2007, Sulfurospirillum sp. Phe 91, strain Phe91
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.