STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE40947.1Ribosomal-protein-alanine N-acetyltransferase. (164 aa)    
Predicted Functional Partners:
SHE40991.1
Citrate synthase; Belongs to the citrate synthase family.
    
  0.790
SHF09843.1
Glutamate synthase (NADPH) large subunit.
   
 
 0.686
SHF79393.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
    
  0.679
SHE40912.1
Hypothetical protein.
 
     0.588
gltX
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
    
  0.560
rnc
RNAse III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
   
    0.551
SHE58584.1
Protein N-acetyltransferase, RimJ/RimL family.
 
  
 0.545
SHF95232.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
  
 
  0.470
SHF46627.1
Ribosomal-protein-alanine N-acetyltransferase.
  
   
 0.464
SHE41083.1
Competence protein ComEC.
       0.408
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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