Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE45502.1 | SHE45572.1 | SAMN05444339_101412 | SAMN05444339_101414 | Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains. | Hypothetical protein. | 0.729 |
SHE45502.1 | SHE45606.1 | SAMN05444339_101412 | SAMN05444339_101415 | Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains. | Hypothetical protein. | 0.548 |
SHE45502.1 | aroB | SAMN05444339_101412 | SAMN05444339_101417 | Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.646 |
SHE45502.1 | aroK | SAMN05444339_101412 | SAMN05444339_101416 | Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.646 |
SHE45502.1 | xerC | SAMN05444339_101412 | SAMN05444339_101413 | Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.625 |
SHE45572.1 | SHE45502.1 | SAMN05444339_101414 | SAMN05444339_101412 | Hypothetical protein. | Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains. | 0.729 |
SHE45572.1 | SHE45606.1 | SAMN05444339_101414 | SAMN05444339_101415 | Hypothetical protein. | Hypothetical protein. | 0.816 |
SHE45572.1 | aroB | SAMN05444339_101414 | SAMN05444339_101417 | Hypothetical protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.766 |
SHE45572.1 | aroK | SAMN05444339_101414 | SAMN05444339_101416 | Hypothetical protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.736 |
SHE45572.1 | xerC | SAMN05444339_101414 | SAMN05444339_101413 | Hypothetical protein. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.817 |
SHE45606.1 | SHE45502.1 | SAMN05444339_101415 | SAMN05444339_101412 | Hypothetical protein. | Mg2+ and Co2+ transporter CorB, contains DUF21, CBS pair, and CorC-HlyC domains. | 0.548 |
SHE45606.1 | SHE45572.1 | SAMN05444339_101415 | SAMN05444339_101414 | Hypothetical protein. | Hypothetical protein. | 0.816 |
SHE45606.1 | aroB | SAMN05444339_101415 | SAMN05444339_101417 | Hypothetical protein. | 3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ). | 0.560 |
SHE45606.1 | aroK | SAMN05444339_101415 | SAMN05444339_101416 | Hypothetical protein. | Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family. | 0.560 |
SHE45606.1 | xerC | SAMN05444339_101415 | SAMN05444339_101413 | Hypothetical protein. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.781 |
SHF04003.1 | recR | SAMN05444339_10388 | SAMN05444339_102448 | DNA translocase FtsK. | DNA replication and repair protein RecR; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO. | 0.616 |
SHF04003.1 | xerC | SAMN05444339_10388 | SAMN05444339_101413 | DNA translocase FtsK. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.705 |
SHF05852.1 | SHF46883.1 | SAMN05444339_103145 | SAMN05444339_106207 | Predicted amidophosphoribosyltransferases. | DNA protecting protein DprA. | 0.914 |
SHF05852.1 | apt | SAMN05444339_103145 | SAMN05444339_106194 | Predicted amidophosphoribosyltransferases. | Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.839 |
SHF05852.1 | xerC | SAMN05444339_103145 | SAMN05444339_101413 | Predicted amidophosphoribosyltransferases. | Integrase/recombinase XerD; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.630 |
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