SHE61354.1 protein (Loktanella atrilutea) - STRING interaction network

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Score

SHE61354.1

Uncharacterized metal-binding protein YceD, DUF177 family. (187 aa)

Predicted Functional Partners:

rpsC

0.991

rpmF

0.978

rpsP

0.938

trmD

0.930

rpsF

0.928

rpsB

0.927

infC

0.926

rplK

0.925

rimM

0.924

rplS

0.923

Your Current Organism:

Loktanella atrilutea

NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHE61354.1	infC	SAMN05444339_101878	SAMN05444339_102234	Uncharacterized metal-binding protein YceD, DUF177 family.	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	0.926
SHE61354.1	rimM	SAMN05444339_101878	SAMN05444339_107139	Uncharacterized metal-binding protein YceD, DUF177 family.	16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	0.924
SHE61354.1	rplK	SAMN05444339_101878	SAMN05444339_10494	Uncharacterized metal-binding protein YceD, DUF177 family.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.925
SHE61354.1	rplS	SAMN05444339_101878	SAMN05444339_107134	Uncharacterized metal-binding protein YceD, DUF177 family.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.923
SHE61354.1	rpmF	SAMN05444339_101878	SAMN05444339_101879	Uncharacterized metal-binding protein YceD, DUF177 family.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.978
SHE61354.1	rpsB	SAMN05444339_101878	SAMN05444339_101687	Uncharacterized metal-binding protein YceD, DUF177 family.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.927
SHE61354.1	rpsC	SAMN05444339_101878	SAMN05444339_104115	Uncharacterized metal-binding protein YceD, DUF177 family.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.991
SHE61354.1	rpsF	SAMN05444339_101878	SAMN05444339_101532	Uncharacterized metal-binding protein YceD, DUF177 family.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.928
SHE61354.1	rpsP	SAMN05444339_101878	SAMN05444339_107140	Uncharacterized metal-binding protein YceD, DUF177 family.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.938
SHE61354.1	trmD	SAMN05444339_101878	SAMN05444339_107135	Uncharacterized metal-binding protein YceD, DUF177 family.	tRNA (guanine37-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.930
infC	SHE61354.1	SAMN05444339_102234	SAMN05444339_101878	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	Uncharacterized metal-binding protein YceD, DUF177 family.	0.926
infC	rimM	SAMN05444339_102234	SAMN05444339_107139	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.	0.572
infC	rplK	SAMN05444339_102234	SAMN05444339_10494	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.	0.953
infC	rplS	SAMN05444339_102234	SAMN05444339_107134	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L19P; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.	0.959
infC	rpmF	SAMN05444339_102234	SAMN05444339_101879	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	LSU ribosomal protein L32P; Belongs to the bacterial ribosomal protein bL32 family.	0.946
infC	rpsB	SAMN05444339_102234	SAMN05444339_101687	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.996
infC	rpsC	SAMN05444339_102234	SAMN05444339_104115	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S3P; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.996
infC	rpsF	SAMN05444339_102234	SAMN05444339_101532	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S6P; Binds together with S18 to 16S ribosomal RNA.	0.994
infC	rpsP	SAMN05444339_102234	SAMN05444339_107140	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	SSU ribosomal protein S16P; Belongs to the bacterial ribosomal protein bS16 family.	0.992
infC	trmD	SAMN05444339_102234	SAMN05444339_107135	Bacterial translation initiation factor 3 (bIF-3); IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins.	tRNA (guanine37-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.	0.574