SHE84973.1 protein (Loktanella atrilutea) - STRING interaction network

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Score

SHE84973.1

4-coumarate--CoA ligase. (519 aa)

Predicted Functional Partners:

SHF33074.1

0.933

rplM

0.901

rplC

0.901

rplX

0.901

rplO

0.901

rplF

0.838

rpsQ

0.826

rplU

0.771

rplQ

0.771

rplN

0.760

Your Current Organism:

Loktanella atrilutea

NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHE84973.1	SHF33074.1	SAMN05444339_102239	SAMN05444339_10581	4-coumarate--CoA ligase.	NAD-dependent formate dehydrogenase flavoprotein subunit.	0.933
SHE84973.1	rplC	SAMN05444339_102239	SAMN05444339_104108	4-coumarate--CoA ligase.	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	0.901
SHE84973.1	rplF	SAMN05444339_102239	SAMN05444339_104125	4-coumarate--CoA ligase.	LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.838
SHE84973.1	rplM	SAMN05444339_102239	SAMN05444339_101626	4-coumarate--CoA ligase.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.901
SHE84973.1	rplN	SAMN05444339_102239	SAMN05444339_104120	4-coumarate--CoA ligase.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.760
SHE84973.1	rplO	SAMN05444339_102239	SAMN05444339_11167	4-coumarate--CoA ligase.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.901
SHE84973.1	rplQ	SAMN05444339_102239	SAMN05444339_11160	4-coumarate--CoA ligase.	LSU ribosomal protein L17P.	0.771
SHE84973.1	rplU	SAMN05444339_102239	SAMN05444339_101807	4-coumarate--CoA ligase.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.771
SHE84973.1	rplX	SAMN05444339_102239	SAMN05444339_104121	4-coumarate--CoA ligase.	LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.901
SHE84973.1	rpsQ	SAMN05444339_102239	SAMN05444339_104119	4-coumarate--CoA ligase.	SSU ribosomal protein S17P; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.826
SHF33074.1	SHE84973.1	SAMN05444339_10581	SAMN05444339_102239	NAD-dependent formate dehydrogenase flavoprotein subunit.	4-coumarate--CoA ligase.	0.933
SHF33074.1	rplU	SAMN05444339_10581	SAMN05444339_101807	NAD-dependent formate dehydrogenase flavoprotein subunit.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.653
rplC	SHE84973.1	SAMN05444339_104108	SAMN05444339_102239	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	4-coumarate--CoA ligase.	0.901
rplC	rplF	SAMN05444339_104108	SAMN05444339_104125	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L6P; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.	0.999
rplC	rplM	SAMN05444339_104108	SAMN05444339_101626	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L13P; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.	0.999
rplC	rplN	SAMN05444339_104108	SAMN05444339_104120	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L14P; Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome; Belongs to the universal ribosomal protein uL14 family.	0.999
rplC	rplO	SAMN05444339_104108	SAMN05444339_11167	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L15P; Binds to the 23S rRNA; Belongs to the universal ribosomal protein uL15 family.	0.999
rplC	rplQ	SAMN05444339_104108	SAMN05444339_11160	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L17P.	0.999
rplC	rplU	SAMN05444339_104108	SAMN05444339_101807	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L21P; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family.	0.998
rplC	rplX	SAMN05444339_104108	SAMN05444339_104121	LSU ribosomal protein L3P; One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit.	LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit.	0.999