STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE92955.1Drug resistance transporter, EmrB/QacA subfamily; Belongs to the major facilitator superfamily. (470 aa)    
Predicted Functional Partners:
SHE33994.1
Membrane fusion protein, multidrug efflux system.
 
 
 0.745
SHF63727.1
Membrane fusion protein, multidrug efflux system.
 
 
 0.739
gltX-2
glutamyl-tRNA synthetase; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu); Belongs to the class-I aminoacyl-tRNA synthetase family. Glutamate--tRNA ligase type 1 subfamily.
       0.672
SHF49529.1
Membrane fusion protein, multidrug efflux system.
 
     0.523
SHF58161.1
RND family efflux transporter, MFP subunit.
  
   0.438
SHE92988.1
SH3 domain-containing protein.
       0.436
SHF09843.1
Glutamate synthase (NADPH) large subunit.
      
 0.405
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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