STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE93492.1Biopolymer transport protein ExbB. (220 aa)    
Predicted Functional Partners:
SHE93531.1
Biopolymer transport protein ExbD.
 
 
 0.999
SHE93566.1
Outer membrane transport energization protein ExbD.
 
 
 0.999
SHE93602.1
Outer membrane transport energization protein TonB.
 
 
 0.998
SHE83690.1
Cell division and transport-associated protein TolR.
 
 
 0.981
SHE83655.1
Cell division and transport-associated protein TolA.
  
 
 0.961
SHE93382.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.877
SHE93458.1
Iron complex transport system ATP-binding protein.
 
  
 0.866
SHE93426.1
Iron complex transport system permease protein; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
    0.852
SHE93343.1
Iron complex transport system substrate-binding protein.
  
  
 0.835
SHE93307.1
Iron complex outermembrane recepter protein.
 
  
 0.760
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.