Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE33256.1 | SHE44625.1 | SAMN05444339_10172 | SAMN05444339_101386 | D-alanine transaminase. | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.952 |
SHE33256.1 | SHE51031.1 | SAMN05444339_10172 | SAMN05444339_101578 | D-alanine transaminase. | Acetolactate synthase, large subunit. | 0.427 |
SHE33256.1 | SHE94477.1 | SAMN05444339_10172 | SAMN05444339_102529 | D-alanine transaminase. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.854 |
SHE33256.1 | SHF06299.1 | SAMN05444339_10172 | SAMN05444339_103160 | D-alanine transaminase. | Branched-chain amino acid aminotransferase. | 0.884 |
SHE33256.1 | SHF09843.1 | SAMN05444339_10172 | SAMN05444339_103272 | D-alanine transaminase. | Glutamate synthase (NADPH) large subunit. | 0.468 |
SHE33256.1 | leuA | SAMN05444339_10172 | SAMN05444339_108100 | D-alanine transaminase. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.951 |
SHE44625.1 | SHE33256.1 | SAMN05444339_101386 | SAMN05444339_10172 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | D-alanine transaminase. | 0.952 |
SHE44625.1 | SHE51031.1 | SAMN05444339_101386 | SAMN05444339_101578 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Acetolactate synthase, large subunit. | 0.852 |
SHE44625.1 | SHE94477.1 | SAMN05444339_101386 | SAMN05444339_102529 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.887 |
SHE44625.1 | SHF06299.1 | SAMN05444339_101386 | SAMN05444339_103160 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Branched-chain amino acid aminotransferase. | 0.955 |
SHE44625.1 | SHF09843.1 | SAMN05444339_101386 | SAMN05444339_103272 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Glutamate synthase (NADPH) large subunit. | 0.514 |
SHE44625.1 | ilvC | SAMN05444339_101386 | SAMN05444339_10557 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | Ketol-acid reductoisomerase; Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol-acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3-dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3-hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate. | 0.916 |
SHE44625.1 | leuA | SAMN05444339_101386 | SAMN05444339_108100 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 2-isopropylmalate synthase; Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3- hydroxy-4-methylpentanoate (2-isopropylmalate); Belongs to the alpha-IPM synthase/homocitrate synthase family. LeuA type 1 subfamily. | 0.884 |
SHE44625.1 | leuB | SAMN05444339_101386 | SAMN05444339_103106 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 3-isopropylmalate dehydrogenase; Catalyzes the oxidation of 3-carboxy-2-hydroxy-4- methylpentanoate (3-isopropylmalate) to 3-carboxy-4-methyl-2- oxopentanoate. The product decarboxylates to 4-methyl-2 oxopentanoate. | 0.923 |
SHE44625.1 | leuC | SAMN05444339_101386 | SAMN05444339_103102 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. | 0.987 |
SHE44625.1 | leuD | SAMN05444339_101386 | SAMN05444339_103103 | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit; Catalyzes the isomerization between 2-isopropylmalate and 3- isopropylmalate, via the formation of 2-isopropylmaleate. Belongs to the LeuD family. LeuD type 1 subfamily. | 0.987 |
SHE51031.1 | SHE33256.1 | SAMN05444339_101578 | SAMN05444339_10172 | Acetolactate synthase, large subunit. | D-alanine transaminase. | 0.427 |
SHE51031.1 | SHE44625.1 | SAMN05444339_101578 | SAMN05444339_101386 | Acetolactate synthase, large subunit. | 2-isopropylmalate synthase; Belongs to the alpha-IPM synthase/homocitrate synthase family. | 0.852 |
SHE51031.1 | SHE94477.1 | SAMN05444339_101578 | SAMN05444339_102529 | Acetolactate synthase, large subunit. | Dihydroxy-acid dehydratase; Belongs to the IlvD/Edd family. | 0.902 |
SHE51031.1 | SHF06299.1 | SAMN05444339_101578 | SAMN05444339_103160 | Acetolactate synthase, large subunit. | Branched-chain amino acid aminotransferase. | 0.446 |
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