STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHE78858.1Phage portal protein, lambda family. (542 aa)    
Predicted Functional Partners:
SHE78822.1
Phage terminase, large subunit GpA.
 
  
 0.972
SHE78998.1
Phage major capsid protein E.
 
    0.948
SHE78926.1
Signal peptide peptidase SppA.
 
    0.883
SHE79237.1
Phage-related baseplate assembly protein.
 
   
 0.865
SHE79272.1
Phage tail protein, P2 protein I family.
 
   
 0.865
SHE79204.1
Hypothetical protein.
 
     0.830
SHE78892.1
Hypothetical protein.
       0.773
SHE79641.1
Hypothetical protein.
 
   
 0.773
SHE79524.1
Phage tail tape measure protein, TP901 family, core region.
 
   
 0.769
SHE78963.1
Hypothetical protein.
       0.757
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.