STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF08824.1Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily. (631 aa)    
Predicted Functional Partners:
SHF08924.1
Peptide/nickel transport system permease protein.
 
  0.965
SHF08892.1
Peptide/nickel transport system permease protein.
 
 
  0.960
SHE88426.1
Biotin transport system permease protein.
  
 0.946
SHF08858.1
Peptide/nickel transport system substrate-binding protein.
 
 
  0.894
SHE42145.1
Peptide/nickel transport system permease protein.
 
 
  0.831
SHF08950.1
Predicted glycosyl transferase.
 
     0.800
SHF09017.1
Predicted glycosyl transferase.
 
     0.796
SHE34226.1
Peptide/nickel transport system permease protein.
 
 
  0.787
SHE42179.1
Peptide/nickel transport system permease protein.
  
 
  0.773
SHF08984.1
Glycosyltransferase involved in cell wall bisynthesis.
 
     0.770
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.