STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF02555.1Two component transcriptional regulator, winged helix family. (228 aa)    
Predicted Functional Partners:
SHF45356.1
Two-component system, chemotaxis family, CheB/CheR fusion protein.
   
 0.992
SHF96282.1
His Kinase A (phospho-acceptor) domain-containing protein.
  
 0.990
SHE65028.1
PAS domain S-box-containing protein.
 0.984
SHF88145.1
PAS domain S-box-containing protein.
 
 0.978
SHE55382.1
Two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR.
 0.936
SHF33074.1
NAD-dependent formate dehydrogenase flavoprotein subunit.
    
 
 0.913
SHF19950.1
Two-component system, OmpR family, sensor histidine kinase ChvG.
 
 0.910
SHF27003.1
Two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ.
 
 0.886
SHF73243.1
Signal transduction histidine kinase.
 
 0.876
SHF96307.1
GAF sensor signal transduction histidine kinase.
 0.875
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.