STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF23197.1Transcriptional regulator, ArsR family. (116 aa)    
Predicted Functional Partners:
SHF23167.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
    0.938
SHF90991.1
Transcriptional regulator, ArsR family.
  
     0.769
SHF31182.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.614
SHF91021.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
 
    0.559
SHF31155.1
Uncharacterized conserved protein.
 
     0.551
SHF23229.1
3-hydroxyisobutyrate dehydrogenase.
       0.530
SHF23261.1
DNA polymerase III, alpha subunit.
       0.432
SHE52270.1
Arsenate reductase.
     
 0.401
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.