STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF23229.13-hydroxyisobutyrate dehydrogenase. (283 aa)    
Predicted Functional Partners:
SHE39754.1
Methylmalonate-semialdehyde dehydrogenase [acylating].
 
 
  0.745
SHF26517.1
3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.708
SHF34944.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 
 0.708
SHF74257.1
3-hydroxyacyl-CoA dehydrogenase; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 
 0.708
SHF11407.1
Aldehyde dehydrogenase (NAD+).
  
 
  0.681
SHF23261.1
DNA polymerase III, alpha subunit.
       0.615
SHE42808.1
2,4-dihydroxyhept-2-enedioate aldolase; Belongs to the HpcH/HpaI aldolase family.
 
 
  0.549
SHF23167.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
       0.530
SHF23197.1
Transcriptional regulator, ArsR family.
       0.530
SHE39652.1
3-hydroxyisobutyrate dehydrogenase; Belongs to the HIBADH-related family.
 
  
 
0.529
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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