STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF24377.1Antitoxin CptB. (92 aa)    
Predicted Functional Partners:
SHE90842.1
Succinate dehydrogenase subunit A; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily.
  
 0.983
SHE66724.1
Fumarase, class I, homodimeric; Catalyzes the reversible hydration of fumarate to (S)-malate. Belongs to the class-I fumarase family.
    
  0.885
SHF24347.1
Transcriptional regulator, contains XRE-family HTH domain.
       0.864
SHF24403.1
Transcriptional regulator, MarR family.
 
     0.811
SHF35313.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
    
  0.711
SHF24322.1
Aspartate aminotransferase.
    
  0.706
SHE90905.1
Succinate dehydrogenase subunit C.
 
  
 0.694
SHF42728.1
methylmalonyl-CoA mutase.
     
 0.693
SHE90565.1
(R)-ethylmalonyl-CoA mutase.
     
 0.662
SHF24306.1
Hypothetical protein.
       0.658
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.