STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF36086.1Predicted amidohydrolase. (323 aa)    
Predicted Functional Partners:
SHF36111.1
4-aminobutyrate aminotransferase / (S)-3-amino-2-methylpropionate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.948
SHF36056.1
Arginine decarboxylase.
 
  
 0.941
SHF36028.1
Hypothetical protein.
 
  
  0.929
SHF35998.1
Predicted choloylglycine hydrolase.
 
     0.895
SHF09843.1
Glutamate synthase (NADPH) large subunit.
    
 0.874
SHE88152.1
Predicted choloylglycine hydrolase.
 
     0.785
SHF70031.1
Agmatine deiminase; Belongs to the agmatine deiminase family.
  
 
 0.780
SHF36446.1
Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
   
 
 0.768
SHF09641.1
Dihydropyrimidine dehydrogenase (NAD+) subunit PreA.
  
  0.751
SHF11407.1
Aldehyde dehydrogenase (NAD+).
   
  0.741
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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