SHF58374.1 protein (Loktanella atrilutea) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

SHF58374.1

Rod shape-determining protein MreC. (304 aa)

Predicted Functional Partners:

SHF58353.1

0.999

SHF58426.1

0.979

mrdB

0.979

SHF81901.1

0.907

SHF05354.1

0.902

SHF58403.1

0.888

SHF58470.1

0.864

SHE38858.1

0.820

SHF38620.1

0.779

SHE84151.1

0.728

Your Current Organism:

Loktanella atrilutea

NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
SHE38858.1	SHE84151.1	SAMN05444339_101237	SAMN05444339_102214	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	Hypothetical protein.	0.642
SHE38858.1	SHF38620.1	SAMN05444339_101237	SAMN05444339_105282	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	Cell division protein FtsI (penicillin-binding protein 3).	0.533
SHE38858.1	SHF58353.1	SAMN05444339_101237	SAMN05444339_108101	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	Rod shape-determining protein MreB.	0.973
SHE38858.1	SHF58374.1	SAMN05444339_101237	SAMN05444339_108102	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	Rod shape-determining protein MreC.	0.820
SHE38858.1	SHF58403.1	SAMN05444339_101237	SAMN05444339_108103	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	Rod shape-determining protein MreD.	0.617
SHE38858.1	SHF58426.1	SAMN05444339_101237	SAMN05444339_108104	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	Peptidoglycan glycosyltransferase.	0.595
SHE38858.1	SHF81901.1	SAMN05444339_101237	SAMN05444339_11437	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	Peptidoglycan glycosyltransferase.	0.549
SHE38858.1	mrdB	SAMN05444339_101237	SAMN05444339_108105	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.599
SHE84151.1	SHE38858.1	SAMN05444339_102214	SAMN05444339_101237	Hypothetical protein.	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	0.642
SHE84151.1	SHF58374.1	SAMN05444339_102214	SAMN05444339_108102	Hypothetical protein.	Rod shape-determining protein MreC.	0.728
SHE84151.1	SHF58403.1	SAMN05444339_102214	SAMN05444339_108103	Hypothetical protein.	Rod shape-determining protein MreD.	0.471
SHF05354.1	SHF58374.1	SAMN05444339_103129	SAMN05444339_108102	DNA repair protein RadC; Belongs to the UPF0758 family.	Rod shape-determining protein MreC.	0.902
SHF38620.1	SHE38858.1	SAMN05444339_105282	SAMN05444339_101237	Cell division protein FtsI (penicillin-binding protein 3).	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	0.533
SHF38620.1	SHF58353.1	SAMN05444339_105282	SAMN05444339_108101	Cell division protein FtsI (penicillin-binding protein 3).	Rod shape-determining protein MreB.	0.691
SHF38620.1	SHF58374.1	SAMN05444339_105282	SAMN05444339_108102	Cell division protein FtsI (penicillin-binding protein 3).	Rod shape-determining protein MreC.	0.779
SHF38620.1	SHF58426.1	SAMN05444339_105282	SAMN05444339_108104	Cell division protein FtsI (penicillin-binding protein 3).	Peptidoglycan glycosyltransferase.	0.793
SHF38620.1	SHF81901.1	SAMN05444339_105282	SAMN05444339_11437	Cell division protein FtsI (penicillin-binding protein 3).	Peptidoglycan glycosyltransferase.	0.790
SHF38620.1	mrdB	SAMN05444339_105282	SAMN05444339_108105	Cell division protein FtsI (penicillin-binding protein 3).	Cell elongation-specific peptidoglycan biosynthesis regulator RodA; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.	0.986
SHF58353.1	SHE38858.1	SAMN05444339_108101	SAMN05444339_101237	Rod shape-determining protein MreB.	Protein RodZ, contains Xre-like HTH and DUF4115 domains.	0.973
SHF58353.1	SHF38620.1	SAMN05444339_108101	SAMN05444339_105282	Rod shape-determining protein MreB.	Cell division protein FtsI (penicillin-binding protein 3).	0.691