STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF63386.1Tripartite ATP-independent transporter solute receptor, DctP family. (334 aa)    
Predicted Functional Partners:
SHF63412.1
TRAP-type C4-dicarboxylate transport system, small permease component.
 
 
  0.991
SHF63435.1
C4-dicarboxylate transporter, DctM subunit.
 
  0.991
SHF91502.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.784
SHF61693.1
TRAP transporter, DctM subunit.
 
    0.783
SHF97723.1
TRAP transporter, DctM subunit.
 
    0.771
SHF26180.1
TRAP transporter, DctM subunit.
 
    0.768
SHF63364.1
Transcriptional regulator, IclR family.
 
     0.755
SHE84361.1
C4-dicarboxylate transporter, DctM subunit.
 
    0.743
SHF63283.1
Hypothetical protein.
 
     0.731
SHF74319.1
TRAP transporter, DctM subunit.
 
    0.708
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.