STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF74493.1Putative spermidine/putrescine transport system permease protein. (288 aa)    
Predicted Functional Partners:
SHF74522.1
Putative spermidine/putrescine transport system permease protein.
 
 
  0.997
SHF74465.1
Putative spermidine/putrescine transport system substrate-binding protein.
 
 
  0.987
SHF74547.1
Putative spermidine/putrescine transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
 
 
  0.966
SHF31833.1
Putative spermidine/putrescine transport system permease protein.
  
 
  0.914
SHE52890.1
Spermidine/putrescine transport system permease protein.
 
 
  0.706
SHE65164.1
Spermidine/putrescine transport system permease protein.
 
 
  0.704
SHE52859.1
Spermidine/putrescine transport system permease protein.
  
  
  0.700
SHE65136.1
Spermidine/putrescine transport system permease protein.
  
  
  0.692
SHE82533.1
Putative spermidine/putrescine transport system permease protein.
  
 
 
0.664
SHF74579.1
MarR family transcriptional regulator, transcriptional regulator for hemolysin.
 
     0.586
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.