STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF76629.1Relaxase/Mobilisation nuclease domain-containing protein. (639 aa)    
Predicted Functional Partners:
SHF76657.1
Type IV secretion system protein VirD4.
 
   
 0.972
SHF77151.1
Type IV secretion system protein VirB4.
 
   
 0.878
SHF76603.1
Hypothetical protein.
       0.814
SHF76981.1
Type IV secretion system protein VirB8.
 
     0.807
SHF77012.1
TrbL/VirB6 plasmid conjugal transfer protein.
 
     0.806
SHF76925.1
Type IV secretion system protein VirB10.
 
     0.805
SHF76953.1
Type IV secretion system protein VirB9.
 
     0.804
SHF77064.1
Type IV secretion system protein VirB5.
  
     0.774
SHF77409.1
Hypothetical protein.
  
     0.768
SHF76479.1
Replication initiation protein RepC.
  
     0.762
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.