Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SHE90709.1 | SHF82905.1 | SAMN05444339_102417 | SAMN05444339_1156 | Hypothetical protein. | Predicted transcriptional regulator. | 0.529 |
SHF36446.1 | SHF82905.1 | SAMN05444339_105196 | SAMN05444339_1156 | Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Predicted transcriptional regulator. | 0.476 |
SHF36446.1 | gcvH | SAMN05444339_105196 | SAMN05444339_102310 | Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.855 |
SHF36446.1 | proA | SAMN05444339_105196 | SAMN05444339_101802 | Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.748 |
SHF82881.1 | SHF82905.1 | SAMN05444339_1155 | SAMN05444339_1156 | Toprim domain-containing protein. | Predicted transcriptional regulator. | 0.545 |
SHF82905.1 | SHE90709.1 | SAMN05444339_1156 | SAMN05444339_102417 | Predicted transcriptional regulator. | Hypothetical protein. | 0.529 |
SHF82905.1 | SHF36446.1 | SAMN05444339_1156 | SAMN05444339_105196 | Predicted transcriptional regulator. | Glutamate dehydrogenase (NAD(P)+); Belongs to the Glu/Leu/Phe/Val dehydrogenases family. | 0.476 |
SHF82905.1 | SHF82881.1 | SAMN05444339_1156 | SAMN05444339_1155 | Predicted transcriptional regulator. | Toprim domain-containing protein. | 0.545 |
SHF82905.1 | SHF83820.1 | SAMN05444339_1156 | SAMN05444339_11540 | Predicted transcriptional regulator. | Toxin ParE1/3/4; Belongs to the RelE toxin family. | 0.963 |
SHF82905.1 | SHF83984.1 | SAMN05444339_1156 | SAMN05444339_11546 | Predicted transcriptional regulator. | ParE toxin of type II toxin-antitoxin system, parDE. | 0.954 |
SHF82905.1 | SHF85083.1 | SAMN05444339_1156 | SAMN05444339_11619 | Predicted transcriptional regulator. | Toxin ParE1/3/4. | 0.963 |
SHF82905.1 | gcvH | SAMN05444339_1156 | SAMN05444339_102310 | Predicted transcriptional regulator. | Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein. | 0.517 |
SHF82905.1 | proA | SAMN05444339_1156 | SAMN05444339_101802 | Predicted transcriptional regulator. | Glutamate-5-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent reduction of L-glutamate 5- phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5-carboxylate. Belongs to the gamma-glutamyl phosphate reductase family. | 0.463 |
SHF82905.1 | proC | SAMN05444339_1156 | SAMN05444339_101176 | Predicted transcriptional regulator. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.473 |
SHF82905.1 | proC-2 | SAMN05444339_1156 | SAMN05444339_1098 | Predicted transcriptional regulator. | Pyrroline-5-carboxylate reductase; Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline. | 0.473 |
SHF83820.1 | SHF82905.1 | SAMN05444339_11540 | SAMN05444339_1156 | Toxin ParE1/3/4; Belongs to the RelE toxin family. | Predicted transcriptional regulator. | 0.963 |
SHF83820.1 | SHF85083.1 | SAMN05444339_11540 | SAMN05444339_11619 | Toxin ParE1/3/4; Belongs to the RelE toxin family. | Toxin ParE1/3/4. | 0.728 |
SHF83984.1 | SHF82905.1 | SAMN05444339_11546 | SAMN05444339_1156 | ParE toxin of type II toxin-antitoxin system, parDE. | Predicted transcriptional regulator. | 0.954 |
SHF85083.1 | SHF82905.1 | SAMN05444339_11619 | SAMN05444339_1156 | Toxin ParE1/3/4. | Predicted transcriptional regulator. | 0.963 |
SHF85083.1 | SHF83820.1 | SAMN05444339_11619 | SAMN05444339_11540 | Toxin ParE1/3/4. | Toxin ParE1/3/4; Belongs to the RelE toxin family. | 0.728 |
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