STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHF92249.1Site-specific DNA-methyltransferase (adenine-specific). (548 aa)    
Predicted Functional Partners:
SHF92219.1
Hypothetical protein.
   
 0.993
SHF92281.1
N-6 DNA Methylase.
 
   
 0.960
SHE38491.1
Phosphatidylglycerol lysyltransferase.
   
    0.833
SHF02639.1
Protein of unknown function.
  
     0.704
SHF58085.1
Putative transcriptional regulator; Belongs to the UPF0301 (AlgH) family.
   
    0.650
SHE51703.1
Transcriptional regulator, GntR family.
   
    0.546
SHE81642.1
PhnB protein.
   
    0.461
SHE81679.1
PhnB protein.
   
    0.461
SHF81027.1
Hypothetical protein.
     
 0.444
SHF84739.1
HAMP domain-containing protein.
  
     0.422
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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