STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SHG00115.1dTDP-4-dehydrorhamnose reductase; Catalyzes the reduction of dTDP-6-deoxy-L-lyxo-4-hexulose to yield dTDP-L-rhamnose; Belongs to the dTDP-4-dehydrorhamnose reductase family. (286 aa)    
Predicted Functional Partners:
SHG00141.1
Hypothetical protein.
 
 
 0.998
SHF80295.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
 0.995
SHF85910.1
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
 0.995
SHG00083.1
Nucleotidyl transferase.
 
  
 0.989
SHF88835.1
Glucose-1-phosphate thymidylyltransferase.
 
  
 0.963
SHF96457.1
Glucose-1-phosphate thymidylyltransferase.
 
  
 0.963
SHF79393.1
Mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.800
SHF79880.1
Glycosyltransferase, GT2 family.
 
  
 0.797
SHE59014.1
UDP-glucuronate decarboxylase.
  
 0.779
SHE59181.1
UDP-glucose 4-epimerase.
  
 0.779
Your Current Organism:
Loktanella atrilutea
NCBI taxonomy Id: 366533
Other names: DSM 29326, IAM 15450, JCM 23210, L. atrilutea, Loktanella atrilutea Hosoya and Yokota 2007, NCIMB 14280, strain IG8
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