STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE61268.1Glycosyl transferase family 2. (318 aa)    
Predicted Functional Partners:
SDF45859.1
Flp pilus assembly protein TadD, contains TPR repeats.
 
 
 0.775
SDH43998.1
Tetratricopeptide (TPR) repeat.
  
 
 0.751
SDG41728.1
Hypothetical protein.
  
   0.709
SDH69192.1
Licheninase.
  
   0.709
SDG09553.1
Anti-anti-sigma factor.
 
  
 0.606
SDE61225.1
TupA-like ATPgrasp.
 
     0.578
SDF65131.1
GtrA-like protein.
  
 
 0.568
SDG61072.1
Putative flippase GtrA (transmembrane translocase of bactoprenol-linked glucose).
  
 
 0.568
SDH06092.1
Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid).
 
  
 0.561
SDE82986.1
Hypothetical protein.
  
 
 0.544
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.