STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE68292.1oxepin-CoA hydrolase / 3-oxo-5,6-dehydrosuberyl-CoA semialdehyde dehydrogenase. (659 aa)    
Predicted Functional Partners:
SDH42033.1
Acyl transferase domain-containing protein.
  
 0.994
SDH41925.1
Acyl transferase domain-containing protein.
  
 0.983
SDH41985.1
Acyl transferase domain-containing protein.
  
 0.983
SDE68106.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaE.
 
 
 0.960
SDE68329.1
phenylacetate-CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA).
 
 
 0.927
SDF26810.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase.
  
  0.927
SDE68219.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaB.
 
  
 0.922
SDE68144.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaD.
 
  
 0.918
SDE51561.1
2-(1,2-epoxy-1,2-dihydrophenyl)acetyl-CoA isomerase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
  0.917
SDE68183.1
ring-1,2-phenylacetyl-CoA epoxidase subunit PaaC.
 
  
 0.910
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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