STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE91793.1Polyhydroxybutyrate depolymerase. (270 aa)    
Predicted Functional Partners:
SDE91762.1
Polyhydroxybutyrate depolymerase.
 
    
0.781
SDE91832.1
FO synthase subunit 1 /FO synthase subunit 2.
       0.546
SDE91866.1
Hypothetical protein.
       0.535
SDE56435.1
Polyhydroxyalkanoate synthase.
     
 0.526
SDG95762.1
Polyhydroxyalkanoate synthase.
     
 0.526
SDG94225.1
tRNA pseudouridine32 synthase / 23S rRNA pseudouridine746 synthase.
 
   
 0.417
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.