Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDE63168.1 | SDE66034.1 | SAMN05216377_101380 | SAMN05216377_101450 | DNA polymerase III, alpha subunit. | DNA polymerase-3 subunit epsilon. | 0.952 |
SDE63168.1 | SDE92854.1 | SAMN05216377_101380 | SAMN05216377_102490 | DNA polymerase III, alpha subunit. | Hypothetical protein. | 0.835 |
SDE63168.1 | SDF52331.1 | SAMN05216377_101380 | SAMN05216377_105165 | DNA polymerase III, alpha subunit. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.996 |
SDE63168.1 | SDG01822.1 | SAMN05216377_101380 | SAMN05216377_108179 | DNA polymerase III, alpha subunit. | ATP-dependent DNA helicase, Rep family. | 0.468 |
SDE63168.1 | SDG51556.1 | SAMN05216377_101380 | SAMN05216377_112168 | DNA polymerase III, alpha subunit. | DNA polymerase-3 subunit gamma/tau. | 0.995 |
SDE63168.1 | SDH37564.1 | SAMN05216377_101380 | SAMN05216377_121139 | DNA polymerase III, alpha subunit. | DNA polymerase III, delta subunit. | 0.992 |
SDE63168.1 | dnaE2 | SAMN05216377_101380 | SAMN05216377_102453 | DNA polymerase III, alpha subunit. | Error-prone DNA polymerase, DnaE-like; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.725 |
SDE66034.1 | SDE63168.1 | SAMN05216377_101450 | SAMN05216377_101380 | DNA polymerase-3 subunit epsilon. | DNA polymerase III, alpha subunit. | 0.952 |
SDE66034.1 | SDE92854.1 | SAMN05216377_101450 | SAMN05216377_102490 | DNA polymerase-3 subunit epsilon. | Hypothetical protein. | 0.820 |
SDE66034.1 | SDF52331.1 | SAMN05216377_101450 | SAMN05216377_105165 | DNA polymerase-3 subunit epsilon. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.964 |
SDE66034.1 | SDG01822.1 | SAMN05216377_101450 | SAMN05216377_108179 | DNA polymerase-3 subunit epsilon. | ATP-dependent DNA helicase, Rep family. | 0.941 |
SDE66034.1 | SDG51556.1 | SAMN05216377_101450 | SAMN05216377_112168 | DNA polymerase-3 subunit epsilon. | DNA polymerase-3 subunit gamma/tau. | 0.965 |
SDE66034.1 | SDH37564.1 | SAMN05216377_101450 | SAMN05216377_121139 | DNA polymerase-3 subunit epsilon. | DNA polymerase III, delta subunit. | 0.931 |
SDE66034.1 | dnaE2 | SAMN05216377_101450 | SAMN05216377_102453 | DNA polymerase-3 subunit epsilon. | Error-prone DNA polymerase, DnaE-like; DNA polymerase involved in damage-induced mutagenesis and translesion synthesis (TLS). It is not the major replicative DNA polymerase. | 0.844 |
SDE92854.1 | SDE63168.1 | SAMN05216377_102490 | SAMN05216377_101380 | Hypothetical protein. | DNA polymerase III, alpha subunit. | 0.835 |
SDE92854.1 | SDE66034.1 | SAMN05216377_102490 | SAMN05216377_101450 | Hypothetical protein. | DNA polymerase-3 subunit epsilon. | 0.820 |
SDE92854.1 | SDF52331.1 | SAMN05216377_102490 | SAMN05216377_105165 | Hypothetical protein. | DNA polymerase-3 subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of re [...] | 0.924 |
SDE92854.1 | SDF73514.1 | SAMN05216377_102490 | SAMN05216377_106247 | Hypothetical protein. | Iron complex transport system substrate-binding protein. | 0.665 |
SDE92854.1 | SDG01822.1 | SAMN05216377_102490 | SAMN05216377_108179 | Hypothetical protein. | ATP-dependent DNA helicase, Rep family. | 0.765 |
SDE92854.1 | SDG51556.1 | SAMN05216377_102490 | SAMN05216377_112168 | Hypothetical protein. | DNA polymerase-3 subunit gamma/tau. | 0.916 |
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