STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF13443.1Predicted DNA-binding protein, MmcQ/YjbR family. (125 aa)    
Predicted Functional Partners:
SDF13363.1
Transcriptional regulator, AraC family.
 
     0.796
SDF13402.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
       0.782
SDF13487.1
Pimeloyl-ACP methyl ester carboxylesterase.
       0.773
SDF13277.1
Phosphoribulokinase / Uridine kinase family protein.
       0.552
SDF13314.1
PAS domain S-box-containing protein.
       0.552
SDG11432.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.490
SDE92268.1
Dolichyl-phosphate-mannose-protein mannosyltransferase.
  
     0.431
SDE62657.1
Winged helix DNA-binding domain-containing protein.
  
     0.430
SDG67384.1
Uncharacterized conserved protein YndB, AHSA1/START domain.
  
     0.404
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.