STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF31063.1ATP dependent helicase, Lhr family. (1535 aa)    
Predicted Functional Partners:
SDF31294.1
Endonuclease-8.
 
  
 0.842
SDF31023.1
Permease of the drug/metabolite transporter (DMT) superfamily.
       0.774
radA
DNA repair protein RadA/Sms; DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function.
   
    0.572
SDH03584.1
Endonuclease-8; Belongs to the FPG family.
 
  
 0.571
SDF30974.1
Transcriptional regulator, TetR family.
       0.563
SDH03538.1
Endonuclease-8; Belongs to the FPG family.
  
  
 0.514
SDE66034.1
DNA polymerase-3 subunit epsilon.
   
    0.510
SDG80402.1
Selenocysteine-specific elongation factor.
    
 
 0.492
SDG95799.1
Superfamily II DNA or RNA helicase.
  
 
   0.482
SDG58215.1
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase.
  
     0.480
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.