STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDF49564.1Predicted membrane protein. (645 aa)    
Predicted Functional Partners:
SDG13622.1
Uncharacterized conserved protein YtfP, gamma-glutamylcyclotransferase (GGCT)/AIG2-like family.
  
     0.566
SDF49600.1
Glycosyl transferase family 2.
       0.535
SDE65644.1
Hypothetical protein.
  
     0.513
SDH04398.1
Hypothetical protein.
  
     0.510
SDH10930.1
TIGR02680 family protein.
  
     0.507
SDF95734.1
Hypothetical protein.
  
     0.505
SDH11002.1
TIGR02677 family protein.
  
     0.505
SDH10968.1
TIGR02678 family protein.
  
     0.498
SDF49633.1
Glycosyltransferase, GT2 family.
       0.480
trmB
tRNA (guanine-N7-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA.
       0.480
Your Current Organism:
Pseudonocardia oroxyli
NCBI taxonomy Id: 366584
Other names: CGMCC 4.3143, DSM 44984, JCM 13909, P. oroxyli, Pseudonocardia oroxyli Gu et al. 2006, Pseudonocardia sp. D10, strain D10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.